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Ellenberger and co-staff (8) had intuited particularly this type of movement in the OB area if they solved the crystal framework in the much bigger human DNA ligase I (HuLig1; 919 amino acids) bound to an adenylylated nick. Their landmark structure was the 1st to doc the circumferential envelopment in the DNA duplex by a ligase clamp along with the resulting bending and distortion of the duplex that drive the base pairs around the 3′-OH side of the nick into an RNA-similar to a helical conformation (8). Identical distortions ended up observed in the ChVLig·DNA elaborate (seven).

), which is identical angular position as being the covalent connections in between the ChVLig OB area and the strands in the latch. As a result, Character has located very various structural solutions to the situation of DNA envelopment by ATP-dependent ligases.

(24) have lately raised a caveat into the assertion that ADP can be an archaeal DNA ligase substrate by suggesting that contamination of your recombinant archaeal ligase protein preparations Along with the apparently thermostable E. coli

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All archaeal proteomes contain an ATP-dependent DNA ligase that resembles in all structural respects (amino acid sequence; conservation of NTase motifs, together with motif VI; and tertiary construction composed of the N-terminal DBD along with the central NTase and C-terminal OB domains) (twenty, 21) the canonical ATP-dependent DNA ligases of eukaryal cells. Biochemical characterization of quite a few archaeal DNA ligases confirmed their demanding dependence on ATP and failure to make use of NAD+ (summarized in Ref. 22). In contrast, other archaeal ligases have been documented to acquire “twin specificity,” variously employing ATP and

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